MacOS Big Sur M1 芯片，R devtool monocle3 安装过程中出现 cmath 错误

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如何解决MacOS Big Sur M1 芯片，R devtool monocle3 @R_39_9382@出现 cmath 错误？

开发过程中遇到MacOS Big Sur M1 芯片，R devtool monocle3 @R_39_9382@出现 cmath 错误的问题如何解决？下面主要结合日常开发的经验，给出你关于MacOS Big Sur M1 芯片，R devtool monocle3 @R_39_9382@出现 cmath 错误的解决方法建议，希望对你解决MacOS Big Sur M1 芯片，R devtool monocle3 @R_39_9382@出现 cmath 错误有所启发或帮助；

我正在尝试使用以下方法在 M1 硅 MacOS Big Sur 11.4 上的 Rstudio（R 版本 4.1.0）中安装 Monocle3 (herE)：

devtools::install_github('cole-trapnell-lab/lEIDenbase')

我收到此错误消息，它看起来像是 cmath 标头不起作用。

clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/library/Frameworks/R.framework/resources/include" -DNDEBUG   -I/usr/local/include  -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -I. -Icigraph/src -Icigraph/include -Icigraph/src/prpack -IlEIDenalg/include -DUSING_R -DPRPACK_IGRAPH_SUPPORT -fPIC  -Wall -g -O2  -c cigraph/src/DensityGrID.cpp -o cigraph/src/DensityGrID.o
In file included from cigraph/src/DensityGrID.cpp:41:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace
using ::signbit;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace
using ::fpclassify;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace; dID you mean 'finite'?
using ::isfinite;
      ~~^
/usr/local/include/math.h:752:12: note: 'finite' declared here
extern int finite(doublE)
           ^
In file included from cigraph/src/DensityGrID.cpp:41:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace
using ::isinf;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace
using ::isnan;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace
using ::isnormal;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; dID you mean '::std::greater'?
using ::isgreater;
      ^~
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/functional:738:29: note: '::std::greater' declared here
struct _liBCPP_TEMPLATE_VIS greater : binary_function<_Tp,_Tp,bool>
                            ^
In file included from cigraph/src/DensityGrID.cpp:41:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:328:7: error: no member named 'isgreaterequal' in the global namespace; dID you mean '::std::greater_equal'?
using ::isgreaterequal;
      ^~
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/functional:767:29: note: '::std::greater_equal' declared here
struct _liBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp,bool>
                            ^
In file included from cigraph/src/DensityGrID.cpp:41:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace
using ::isless;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace
using ::islessequal;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace
using ::islessgreater;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace
using ::isunordered;
      ~~^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace
using ::isunordered;
      ~~^
13 errors generated.
make: *** [cigraph/src/DensityGrID.o] Error 1
ERROR: compilation Failed for package ‘lEIDenbase’
* removing ‘/library/Frameworks/R.framework/Versions/4.1/resources/library/lEIDenbase’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/37/6b_9y9v11nzftf912bbhbhr00000gn/T//Rtmph3567G/file159343f7bb5fc/lEIDenbase_0.1.3.tar.gz’ had non-zero exit status
> 

我使用技巧 here 编辑了 ~/.R/Makevars 文件，以将 SDK“重新链接”到 C++ 编译器。还是不行。
我也尝试过更新 Xcode，删除并重新下载 Xcode，以及删除并重新下载 Commandlinetools。

没有任何效果。

这是我当前的 ~/.R/Makevars 文件：

CC=clang
CXX=clang++
CXXFLAGS= -O3 -pedantic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk

提前感谢您的建议或解决方法。

解决方法

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